Compressing PTAGIS Data

Functions for reading in complete capture histories and compressing them

readCTH()

Read In Complete Tag History

compress()

Compress PTAGIS Data

qcTagHistory()

Quality Check Complete Tag Histories

extractTagObs()

Tag Detections

Querying Data

Functions for querying data from PTAGIS or NHDPlus

queryCapHist()

PTAGIS Detection History

queryFlowlines()

Download NHDPlus flow lines

queryInterrogationConfig()

PTAGIS Interrogation sites configuration

queryInterrogationMeta()

PTAGIS Interagation sites metadata

queryMRRDataFile()

PTAGIS MRR Data File

queryMRRMeta()

PTAGIS MRR sites

queryObsDART()

Query DART for observations of PIT tags

queryPtagisMeta()

Query PTAGIS Site Metadata

queryTagEvents()

PTAGIS PIT Tag Events

queryTagsDART()

Query DART for list of PIT tags

queryTimerTagSite()

PTAGIS Test Tag Detections

Building Configuration File

Functions to help the user build a configuration file

buildConfig()

Build configuration file

Parent-Child Table

Functions to help the user build, edit and visualize a parent-child table

extractSites()

Extract Sites

buildParentChild()

Build a Parent-Child table

addParentChildNodes()

Add Nodes to Parent-Child Table

editParentChild()

Edit a Parent-Child table

findDwnstrmHydroseg()

Find Hydro Segment of Downstream Site

findDwnstrmSite()

Determine next downstream site

listParents()

List Parent Locations

buildNodeOrder()

Build Node Order

buildPaths()

Build Possible Paths

plotNodes()

Detection Node Schematic

buildNodeGraph()

Build Graph of Nodes

getNodeInfo()

Compile information about each node

Manipulate Data

Functions to help the user manipulate and summarize data

addDirection()

Add Direction

estimateFinalLoc()

Final location

estNodeEff()

Node Efficiency

filterDetections()

Determine Detections to Keep

prepWrapper()

Prepare Data for DABOM

summarizeTagData()

Tag Summary

compressDART()

Compress Detections from DART Query

readTestTag()

Read In Test Tag Data

buildCapHist()

Build capture history

defineCapHistCols()

Define Column Names for Capture History Matrix

Deprecated functions

These functions have been superseded

findDwnStrmSite_RKM()

Find downstream site

writeOldNetworks()

Old Node Networks

writeLGRNodeNetwork()

LGR Node Network

writePRDNodeNetwork()

Priest Dam Node Network

writePRONodeNetwork()

Prosser Dam Node Network

writeTUMNodeNetwork()

Tumwater Node Network

writeTUMNodeNetwork_noUWE()

Tumwater Node Network