Function reference • PITcleanr

Compressing PTAGIS Data Functions for reading in complete capture histories and compressing them
`readCTH()`	Read In Complete Tag History
`compress()`	Compress PTAGIS Data
`qcTagHistory()`	Quality Check Complete Tag Histories
`extractTagObs()`	Tag Detections
Querying Data Functions for querying data from PTAGIS or NHDPlus
`queryCapHist()`	PTAGIS Detection History
`queryFlowlines()`	Download NHDPlus flow lines
`queryInterrogationConfig()`	PTAGIS Interrogation sites configuration
`queryInterrogationMeta()`	PTAGIS Interagation sites metadata
`queryMRRDataFile()`	PTAGIS MRR Data File
`queryMRRMeta()`	PTAGIS MRR sites
`queryObsDART()`	Query DART for observations of PIT tags
`queryPtagisMeta()`	Query PTAGIS Site Metadata
`queryTagEvents()`	PTAGIS PIT Tag Events
`queryTagsDART()`	Query DART for list of PIT tags
`queryTimerTagSite()`	PTAGIS Test Tag Detections
Building Configuration File Functions to help the user build a configuration file
`buildConfig()`	Build configuration file
Parent-Child Table Functions to help the user build, edit and visualize a parent-child table
`extractSites()`	Extract Sites
`buildParentChild()`	Build a Parent-Child table
`addParentChildNodes()`	Add Nodes to Parent-Child Table
`editParentChild()`	Edit a Parent-Child table
`findDwnstrmHydroseg()`	Find Hydro Segment of Downstream Site
`findDwnstrmSite()`	Determine next downstream site
`listParents()`	List Parent Locations
`buildNodeOrder()`	Build Node Order
`buildPaths()`	Build Possible Paths
`plotNodes()`	Detection Node Schematic
`buildNodeGraph()`	Build Graph of Nodes
`getNodeInfo()`	Compile information about each node
Manipulate Data Functions to help the user manipulate and summarize data
`addDirection()`	Add Direction
`estimateFinalLoc()`	Final location
`estNodeEff()`	Node Efficiency
`filterDetections()`	Determine Detections to Keep
`prepWrapper()`	Prepare Data for DABOM
`summarizeTagData()`	Tag Summary
`compressDART()`	Compress Detections from DART Query
`readTestTag()`	Read In Test Tag Data
`buildCapHist()`	Build capture history
`defineCapHistCols()`	Define Column Names for Capture History Matrix
Deprecated functions These functions have been superseded
`findDwnStrmSite_RKM()`	Find downstream site
`writeOldNetworks()`	Old Node Networks
`writeLGRNodeNetwork()`	LGR Node Network
`writePRDNodeNetwork()`	Priest Dam Node Network
`writePRONodeNetwork()`	Prosser Dam Node Network
`writeTUMNodeNetwork()`	Tumwater Node Network
`writeTUMNodeNetwork_noUWE()`	Tumwater Node Network

Reference

Compressing PTAGIS Data

Querying Data

Building Configuration File

Parent-Child Table

Manipulate Data

Deprecated functions