For certain locations (currently Lower Granite Dam and Priest Rapids Dam), query DART to return all PIT tags observed there from a given species in a given spawn year, as well as any subsequent detections upstream, and then compress them.
Chinook, Coho, Steelhead and Sockeye
code for initial location. Currently includes options for Lower Granite (GRA) and Priest Rapids (PRA) dams.
available years includes spawn year 2010 to present
is a data frame which assigns node names to unique site, antenna, and site configuration ID combinations. One example can be built with the function `buildConfig`. If no configuration file is provided, nodes are considered site codes by default. If nodes are assigned, the column name should be `node`.
other arguements to be passed to the `compress` function if the default values are not suitable.
A tibble with particular information from a complete tag history PTAGIS query.
compressDART(species = 'Chinook',
loc = "GRA",
spawn_year = 2019)
#> $compress_obs
#> # A tibble: 7,617 × 9
#> tag_code node slot event_type_name n_dets min_det
#> <chr> <chr> <int> <chr> <int> <dttm>
#> 1 384.0A0301AFC3 GRA 1 Observation 11 2019-09-27 05:50:49
#> 2 384.1B79719E60 GRA 1 Observation 13 2019-06-08 11:45:02
#> 3 384.1B79719E60 ESS 2 Observation 2 2019-07-06 14:51:51
#> 4 384.1B79719E60 JOHNSC 3 Recapture 48 2019-07-08 14:36:02
#> 5 384.1B79775BEB GRA 1 Observation 17 2019-05-25 06:11:04
#> 6 384.3B23A4A244 GRA 1 Observation 15 2019-09-10 07:54:21
#> 7 384.3B23A562DE GRA 1 Observation 6 2019-06-07 11:23:51
#> 8 384.3B23A562DE LGRLDR 2 Recapture 1 2019-06-07 12:39:19
#> 9 384.3B23A562DE GRA 3 Observation 10 2019-06-07 14:30:16
#> 10 384.3B23A562DE ZEN 4 Observation 1 2019-06-30 00:36:40
#> # ℹ 7,607 more rows
#> # ℹ 3 more variables: max_det <dttm>, duration <drtn>, travel_time <drtn>
#>
#> $dart_obs
#> # A tibble: 67,203 × 34
#> tag_code mark_species_name mark_rear_type_name event_type_name
#> <chr> <chr> <chr> <chr>
#> 1 3DD.007784D29F Chinook H Observation
#> 2 3DD.007784D29F Chinook H Observation
#> 3 3DD.007784D29F Chinook H Observation
#> 4 3DD.007784D29F Chinook H Observation
#> 5 3DD.007784D29F Chinook H Observation
#> 6 3DD.007784D29F Chinook H Recapture
#> 7 3DD.007784D29F Chinook H Observation
#> 8 3DD.007784D29F Chinook H Observation
#> 9 3DD.007784D29F Chinook H Observation
#> 10 3DD.007784D29F Chinook H Observation
#> # ℹ 67,193 more rows
#> # ℹ 30 more variables: event_site_code_value <chr>,
#> # event_date_time_value <dttm>, antenna_id <chr>,
#> # antenna_group_configuration_value <dbl>, start_time <dttm>, stage <chr>,
#> # shuc <dbl>, srkm <chr>, mark_date <date>, file_id <chr>, mark_site <chr>,
#> # rel_site <chr>, rel_date <date>, t_species <dbl>, t_run <dbl>,
#> # length <dbl>, esu_type <chr>, rhuc <dbl>, rrkm <chr>, flags <chr>, …
#>