Function reference • DABOM

Writing JAGS Model Functions for writing and updating the JAGS .txt model file
`writeDABOM()`	Write DABOM JAGS model
`fixNoFishNodes()`	Modify basic JAGS model
JAGS Inputs Functions to prepare JAGS Inputs
`setInitialValues()`	DABOM Initial Values
`createJAGSinputs()`	Prep DABOM JAGS inputs
`addTimeVaryData()`	Add Time-Varying Data
`setSavedParams()`	Set Saved Parameters
Summarizing Results Functions related to summarizing detection, movement and escapement estimates
`extractDetectPost()`	Extract Detection Posteriors
`extractTransPost()`	Extract Transition Posteriors
`compileTransProbs()`	Compile Transition Probabilities
`summariseDetectProbs()`	Summarise Detection Probabilities
`summarisePost()`	Summarize Posteriorrs
`calcAbundPost()`	Calculate Abundance Posteriors
Internal Functions These functions are used internally, within other functions
`createDABOMcapHist()`	Prep DABOM capture histories
`createDirichletVector()`	Create Dirichlet vector
`createNodeList()`	Node List
`defineDabomColNms()`	Define Column Names for DABOM matrix
`estMode()`	Estimate Mode of Posterior Distribution
`setBranchNums()`	Set Branch Numbers

Reference