Compile JAGS data — prepJAGS • STADEM

Compile data into format for the JAGS total escapement model

prepJAGS(
  lgr_weekly = NULL,
  sthd_B_run = F,
  hw_type = c("PBT", "Morph"),
  wild_tags = F
)

Arguments

lgr_weekly: dataframe containing weekly summaries of window counts and trap data. Part of what is returned by summSTADEM.
sthd_B_run: should numbers of B run steelhead be incorporated? These are defined as wild steelhead greater than 780mm in length. Default is FALSE.
hw_type: what criteria is used to determine hatchery vs. wild? Morph uses the morphilogical call made at the trap. PBT uses the genetic information gleaned from parental based tagging.
wild_tags: Should only wild PIT tags be used to estimate daytime passage and re-ascension rates? Default is FALSE.

Kevin See